Index

A

add_rows() (epifx.summary.ExceedThreshold method) (epifx.summary.ExpectedObs method) (epifx.summary.ObsLikelihood method) (epifx.summary.PeakForecastCIs method) (epifx.summary.PeakForecastEnsembles method) (epifx.summary.PeakSizeAccuracy method) (epifx.summary.PeakTimeAccuracy method) (epifx.summary.PrOutbreak method)

D

days_to() (epifx.summary.PeakMonitor method) DefaultProposal (class in epifx.select) define_summary_components() (epifx.select.Target method) (epifx.select.TargetAny method) (epifx.select.TargetPeakMVN method) dtype() (epifx.summary.ExceedThreshold method) (epifx.summary.ExpectedObs method) (epifx.summary.ObsLikelihood method) (epifx.summary.PeakForecastCIs method) (epifx.summary.PeakForecastEnsembles method) (epifx.summary.PeakSizeAccuracy method) (epifx.summary.PeakTimeAccuracy method) (epifx.summary.PrOutbreak method)

E

exceed_date (epifx.summary.ThresholdMonitor attribute) exceed_mask (epifx.summary.ThresholdMonitor attribute) exceed_weight (epifx.summary.ThresholdMonitor attribute) ExceedThreshold (class in epifx.summary)

expect() (epifx.obs.PopnCounts method) (epifx.obs.SampleCounts method) expected_obs (epifx.summary.PeakMonitor attribute) ExpectedObs (class in epifx.summary)

F

files() (in module epifx.cmd.cmp) finished() (epifx.summary.ExceedThreshold method) (epifx.summary.ObsLikelihood method) (epifx.summary.PeakForecastCIs method) (epifx.summary.PeakForecastEnsembles method) (epifx.summary.PeakSizeAccuracy method) (epifx.summary.PeakTimeAccuracy method)

from_file() (epifx.obs.PopnCounts method) (epifx.obs.SampleCounts method)

I

init() (epifx.det.SEEIIR method) (epifx.det.SEIR method) (epifx.stoch.SEEIIR method)

L

llhd_in() (epifx.obs.PopnCounts method) (epifx.obs.SampleCounts method) local_settings() (built-in function) log_llhd() (epifx.obs.PopnCounts method) (epifx.obs.SampleCounts method)

logpdf() (epifx.select.Target method) (epifx.select.TargetAny method) (epifx.select.TargetPeakMVN method)

M

make() (in module epifx.summary)

N

n_rows() (epifx.summary.ExceedThreshold method) (epifx.summary.ExpectedObs method) (epifx.summary.ObsLikelihood method) (epifx.summary.PeakForecastCIs method) (epifx.summary.PeakForecastEnsembles method) (epifx.summary.PeakSizeAccuracy method) (epifx.summary.PeakTimeAccuracy method) (epifx.summary.PrOutbreak method)

O

ObsLikelihood (class in epifx.summary)

P

peak_date (epifx.summary.PeakMonitor attribute) peak_size (epifx.summary.PeakMonitor attribute) peak_time (epifx.summary.PeakMonitor attribute) peak_weight (epifx.summary.PeakMonitor attribute) PeakForecastCIs (class in epifx.summary) PeakForecastEnsembles (class in epifx.summary)

PeakMonitor (class in epifx.summary) PeakSizeAccuracy (class in epifx.summary) PeakTimeAccuracy (class in epifx.summary) PopnCounts (class in epifx.obs) Proposal (class in epifx.select) PrOutbreak (class in epifx.summary)

Q

quantiles() (epifx.obs.PopnCounts method) (epifx.obs.SampleCounts method)

S

sample() (epifx.select.DefaultProposal method) (epifx.select.Proposal method) SampleCounts (class in epifx.obs) SEEIIR (class in epifx.det) (class in epifx.stoch)

SEIR (class in epifx.det) select() (in module epifx.select) simulate() (epifx.obs.PopnCounts method) (epifx.obs.SampleCounts method) stat_generation_interval() (epifx.stoch.SEEIIR method) stat_info() (epifx.stoch.SEEIIR method)

T

Target (class in epifx.select) TargetAny (class in epifx.select)

TargetPeakMVN (class in epifx.select) ThresholdMonitor (class in epifx.summary)

U

update() (epifx.det.SEEIIR method) (epifx.det.SEIR method) (epifx.stoch.SEEIIR method)